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Where is my local mail stored?
In KDE4, check the setting:
cat ~/.kde/share/config/kmailrc | grep folders
Check the 'Path' setting in:
kmail stops filtering incoming emails
$ akonadictl fsck
$ akonadictl vacuum
$ akonadictl restart
If you can't seem to delete/move messages in a specific folder, go to akonadiconsole -> Browser -> right click the folder and clear cache, then restart akonadi.